GCB Publications

2024

Doorenbos, Lars; Sznitman, Raphael; Márquez-Neila, Pablo (October 2024). Learning non-linear invariants for unsupervised out-of-distribution detection. In: European Conference on Computer Vision.

Moghani, Masoud; Doorenbos, Lars; Panitch, William Chung-Ho; Huver, Sean; Azizian, Mahdi; Goldberg, Ken; Garg, Animesh (October 2024). SuFIA: Language-Guided Augmented Dexterity for Robotic Surgical Assistants. In: International Conference on Intelligent Robots and Systems.

Lewetag, Raphaela D.; Nimani, Saranda; Alerni, Nicolò; Hornyik, Tibor; Jacobi, Simon F.; Moss, Robin; Menza, Marius; Pilia, Nicolas; Walz, Teo P.; HajiRassouliha, Amir; Perez‐Feliz, Stefanie; Zehender, Manfred; Seemann, Gunnar; Zgierski‐Johnston, Callum M.; Lopez, Ruben; Odening, Katja E. (2024). Mechano‐electrical interactions and heterogeneities in wild‐type and drug‐induced long QT syndrome rabbits. The journal of physiology, 602(18), pp. 4511-4527. The Physiological Society 10.1113/JP284604

Renz, Patricia; Steinfort, Marel; Haesler, Valérie; Tscherrig, Vera; Huang, Eric J; Chavali, Manideep; Liddelow, Shane; Rowitch, David H; Surbek, Daniel; Schoeberlein, Andreina; Brosius Lutz, Amanda (2024). Neuroinflammatory reactive astrocyte formation correlates with adverse outcomes in perinatal white matter injury. Glia, 72(9), pp. 1663-1673. Wiley 10.1002/glia.24575

Aldeia, Claudia; Campos-Madueno, Edgar I; Endimiani, Andrea (2024). Genomic insights into Leminorella grimontii and its chromosomal class A GRI β-lactamase. European journal of clinical microbiology & infectious diseases, 43(9), pp. 1855-1860. Springer 10.1007/s10096-024-04888-7

Seubnooch, Patcharamon; Montani, Matteo; Dufour, Jean-François; Masoodi, Mojgan (2024). Spatial lipidomics reveals zone-specific hepatic lipid alteration and remodeling in Metabolic dysfunction-associated steatohepatitis. Journal of lipid research, 65(9), p. 100599. Elsevier 10.1016/j.jlr.2024.100599

Bessell, Emily; Finlay, Rachel E; James, Louisa K; Ludewig, Burkhard; Harris, Nicola L; Krebs, Philippe; Hepworth, Matthew R; Dubey, Lalit Kumar (2024). Stromal cell and B cell dialogue potentiates IL-33-enriched lymphoid niches to support eosinophil recruitment and function during type 2 immunity. Cell reports, 43(8), p. 114620. Cell Press 10.1016/j.celrep.2024.114620

Williams, Hannah L.; Frei, Ana Leni; Koessler, Thibaud; Berger, Martin D.; Dawson, Heather; Michielin, Olivier; Zlobec, Inti (2024). The current landscape of spatial biomarkers for prediction of response to immune checkpoint inhibition. NPJ precision oncology, 8(1), p. 178. Springer Nature 10.1038/s41698-024-00671-1

Chicca, Andrea; Bátora, Daniel; Ullmer, Christoph; Caruso, Antonello; Grüner, Sabine; Fingerle, Jürgen; Hartung, Thomas; Degen, Roland; Müller, Matthias; Grether, Uwe; Pacher, Pal; Gertsch, Jürg (2024). A Highly Potent, Orally Bioavailable Pyrazole-Derived Cannabinoid CB2 Receptor- Selective Full Agonist for In Vivo Studies. ACS pharmacology & translational science, 7(8), pp. 2424-2438. ACS Publications 10.1021/acsptsci.4c00269

Karatkevich, Darya; Losmanová, Tereza; Zens, Philipp; Deng, Haibin; Dubey, Christelle; Zhang, Tuo; Casty, Corsin; Gao, Yanyun; Neppl, Christina; Berezowska, Sabina; Wang, Wenxiang; Peng, Ren-Wang; Schmid, Ralph Alexander; Dorn, Patrick; Marti, Thomas (2024). Chemotherapy increases CDA expression and sensitizes malignant pleural mesothelioma cells to capecitabine treatment. Scientific Reports, 14(18206) Nature Publishing Group 10.1038/s41598-024-69347-x

Gharailoo, Zahra; Plattner, Kevin; Augusto, Gilles; Engeroff, Paul; Vogel, Monique; Bachmann, Martin F (2024). Generation of a virus-like particles based vaccine against IgE. Allergy, 79(8), pp. 2207-2221. 10.1111/all.16090

Turco, Federico; Capiglioni, Milena; Weng, Guodong; Slotboom, Johannes (2024). TensorFit: A torch-based tool for ultrafast metabolite fitting of large MRSI data sets. Magnetic resonance in medicine, 92(2), pp. 447-458. Wiley 10.1002/mrm.30084

Wirdnam, Corina D; Warmus, Dawid; Faso, Carmen (2024). Nourseothricin as a novel drug for selection of transgenic Giardia lamblia. International journal for parasitology. Drugs and drug resistance, 25(100543), p. 100543. Elsevier 10.1016/j.ijpddr.2024.100543

Folini, Anja; Zhang, Lan; Luedi, Markus M; Moolan-Vadackumchery, Robin; Matthiss, Lena; Hoffmann, Anneliese; Stüber, Frank; Huang, Melody Ying-Yu (2024). Regulatory effects of microRNAs on monocytic HLA-DR surface expression. European journal of immunology, 54(8), e2350756. Wiley-VCH 10.1002/eji.202350756

Mohammadi, Sepide; Pahlevaninezhad, Niusha; Valavi, Parastoo; Irani, Dornaz Mehinparvar; Shams, Farzane; Mohamadi, Pardis; Jokar, Mohammad; Abdous, Arman (2024). Neurological consequences after portosystemic shunt attenuation in cats: a meta-analysis study. The veterinary journal, 306, p. 106150. Elsevier 10.1016/j.tvjl.2024.106150

Ferreira de Sousa, Maria Cristina; Imhof, Dennis; Hänggeli, Kai Pascal Alexander; Choi, Ryan; Hulverson, Matthew A; Arnold, Samuel L M; Van Voorhis, Wesley C; Fan, Erkang; Roberto, Sánchez-Sánchez; Ortega-Mora, Luis M; Hemphill, Andrew (2024). Efficacy of the bumped kinase inhibitor BKI-1708 against the cyst-forming apicomplexan parasites Toxoplasma gondii and Neospora caninum in vitro and in experimentally infected mice. International journal for parasitology. Drugs and drug resistance, 25, p. 100553. Elsevier 10.1016/j.ijpddr.2024.100553

Schön, Jacob; Barut, G Tuba; Trüeb, Bettina Salome; Halwe, Nico Joel; Berenguer Veiga, Inês; Kratzel, Annika; Ulrich, Lorenz; Kelly, Jenna N; Brügger, Melanie; Wylezich, Claudia; Taddeo, Adriano; Aguiar Moreira, Etori; Túrós, Demeter; Grau-Roma, Llorenç; Ahrens, Ann Kathrin; Schlottau, Kore; Britzke, Tobias; Breithaupt, Angele; Corleis, Björn; Kochmann, Jana; ... (2024). A safe, effective and adaptable live-attenuated SARS-CoV-2 vaccine to reduce disease and transmission using one-to-stop genome modifications. Nature microbiology, 9(8), pp. 2099-2112. Springer Nature 10.1038/s41564-024-01755-1

Das, Moushumi; Semple, Jennifer I; Haemmerli, Anja; Volodkina, Valeriia; Scotton, Janik; Gitchev, Todor; Annan, Ahrmad; Campos, Julie; Statzer, Cyril; Dakhovnik, Alexander; Ewald, Collin Y; Mozziconacci, Julien; Meister, Peter (2024). Condensin I folds the Caenorhabditis elegans genome. Nature genetics, 56(8), pp. 1737-1749. Springer Nature 10.1038/s41588-024-01832-5

Avanthay, Robin; Garcia Nicolas, Obdulio; Ruggli, Nicolas; Grau Roma, Llorenç; Párraga-Ros, Ester; Summerfield, Artur; Zimmer, Gert (2024). Evaluation of a novel intramuscular prime/intranasal boost vaccination strategy against influenza in the pig model. PLoS pathogens, 20(8) Public Library of Science 10.1371/journal.ppat.1012393

Kaethner, Marc; Zumstein, Pascal; Preza, Matías; Grossenbacher, Philipp; Bartetzko, Anissa; Lochner, Martin; Schürch, Stefan; Regnault, Clement; Villalobos Ramirez, Daniel; Lundström Stadelmann, Britta (27 July 2024). Investigation of the threonine metabolism of Echinococcus multilocularis: the threonine dehydrogenase as a potential drug target in alveolar echinococcosis (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.07.27.605433

Lazaridi, Symela; Yuan, Jing; Lemmin, Thomas (2024). Atomic insights into the signaling landscape of E. coli PhoQ histidine kinase from molecular dynamics simulations. Scientific reports, 14(1), p. 17659. Springer Nature 10.1038/s41598-024-68206-z

Bieri, Jan; Suter, Corinne; Caliaro, Oliver; Bartetzko, Seraina; Bircher, Cornelia; Ros, Carlos (2024). Globoside Is an Essential Intracellular Factor Required for Parvovirus B19 Endosomal Escape. Cells, 13(15) MDPI 10.3390/cells13151254

Shams, Farzane; Jokar, Mohammad; Abdous, Arman; Mohammadi, Pardis; Abbassioun, Aryan; Seuberlich, Torsten; Rahmanian, Vahid (2024). Seroprevalence of Toxoplasma gondii and Neospora spp. in horse population of Tehran, Iran. Scientific reports, 14(1), p. 17054. Springer Nature 10.1038/s41598-024-61999-z

Wyler, Florian; Manogaran, Thuvarakha; Monney, Nathalie; Salem, Yasmin; Steinberg, Ruth; Kentgens, Anne-Christianne; Jacobs, Carvern; Chaya, Shaakira; Sena, Carla Rebeca da Silva; Künstle, Noëmi; Gorlanova, Olga; Yammine, Sophie; Gray, Diane M; Frey, Urs; Oestreich, Marc-Alexander; Latzin, Philipp (2024). Optimized algorithm for speed-of-sound-based infant sulfur hexafluoride multiple-breath washout measurements. (In Press). Pediatric pulmonology Wiley 10.1002/ppul.27180

Perruzza, Lisa; Rezzonico Jost, Tanja; Raneri, Matteo; Gargari, Giorgio; Palatella, Martina; De Ponte Conti, Benedetta; Seehusen, Frauke; Heckmann, Julia; Viemann, Dorothee; Guglielmetti, Simone; Grassi, Fabio (2024). Protection from environmental enteric dysfunction and growth improvement in malnourished newborns by amplification of secretory IgA. Cell reports. Medicine, 5(7), p. 101639. Elsevier 10.1016/j.xcrm.2024.101639

Galli, Jasmin; Almiñana, Carmen; Wiesendanger, Mahesa; Schuler, Gerhard; Kowalewski, Mariusz Pawel; Klisch, Karl (2024). Bovine placental extracellular vesicles carry the fusogenic syncytin BERV-K1. Theriogenology, 223, pp. 59-69. Elsevier 10.1016/j.theriogenology.2024.04.012

Gomes, Carlos Vinícius; Mendes, Bruno Melo; Paixão, Lucas; Gnesin, Silvano; Müller, Cristina; van der Meulen, Nicholas P; Strobel, Klaus; Fonseca, Telma Cristina Ferreira; Lima, Thiago Viana Miranda (2024). Comparison of the dosimetry of scandium-43 and scandium-44 patient organ doses in relation to commonly used gallium-68 for imaging neuroendocrine tumours. EJNMMI Physics, 11(61) Springer 10.1186/s40658-024-00669-5

Bornemann, Karoline-Marie; Jahren, Silje Ekroll; Obrist, Dominik (2024). The relation between aortic morphology and transcatheter aortic heart valve thrombosis: Particle tracing and platelet activation in larger aortic roots with and without neo-sinus. Computers in biology and medicine, 179, p. 108828. Elsevier 10.1016/j.compbiomed.2024.108828

Lin, Ting-Yu; Kleemann, Leon; Jeżowski, Jakub; Dobosz, Dominika; Rawski, Michał; Indyka, Paulina; Ważny, Grzegorz; Mehta, Rahul; Chramiec-Głąbik, Andrzej; Koziej, Łukasz; Ranff, Tristan; Fufezan, Christian; Wawro, Mateusz; Kochan, Jakub; Bereta, Joanna; Leidel, Sebastian A; Glatt, Sebastian (2024). The molecular basis of tRNA selectivity by human pseudouridine synthase 3. Molecular cell, 84(13), 2472-2489.e8. Cell Press 10.1016/j.molcel.2024.06.013

Ambrodji, Alisa; Sadlon, Angélique; Amstutz, Ursula; Hoch, Dennis; Berger, Martin D.; Bastian, Sara; Offer, Steven M; Largiadèr, Carlo R. (2024). Approach for Phased Sequence-Based Genotyping of the Critical Pharmacogene Dihydropyrimidine Dehydrogenase (DPYD). International journal of molecular sciences, 25(14) MDPI 10.3390/ijms25147599

Baumann, Elias; Dislich, Bastian; Rumberger, Josef Lorenz; Nagtegaal, Iris D; Martinez, Maria Rodriguez; Zlobec, Inti (3 July 2024). HoVer-NeXt: A Fast Nuclei Segmentation and Classification Pipeline for Next Generation Histopathology. In: Medical Imaging with Deep Learning. Paris. 03.07.2024 - 05.07.2024.

Strunz, Franziska; Stähli, Christoph; Heverhagen, Johannes T; Hofstetter, Wilhelm; Egli, Rainer J (2024). Gadolinium-Based Contrast Agents and Free Gadolinium Inhibit Differentiation and Activity of Bone Cell Lineages. Investigative radiology, 59(7), pp. 495-503. Lippincott Williams & Wilkins 10.1097/RLI.0000000000001049

Fernandez, Javier Eduardo; Egli, Adrian; Overesch, Gudrun; Perreten, Vincent (2024). Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution. Nature Communications, 15(1), p. 5526. Springer Nature 10.1038/s41467-024-49644-9

Øzdemir, Cagla Margit; Nielsen, Mette Mølby; Liimatta, Jani; Voegel, Clarissa D; Naamneh Elzenaty, Rawda; Wasehuus, Victor S; Lind-Holst, Marie; Ornstrup, Marie Juul; Gram, Stine Bjørn; Ousager, Lilian Bomme; Flück, Christa E; Gravholt, Claus H (2024). Late diagnosis of partial 3β-hydroxysteroid dehydrogenase type 2 deficiency - characterization of a new genetic variant. Endocrinology, diabetes & metabolism case reports, 2024(3) Bioscientifica 10.1530/EDM-23-0090

Plähn, Nils M J; Poli, Simone; Peper, Eva S.; Açıkgöz, Berk C.; Kreis, Roland; Ganter, Carl; Bastiaansen, Jessica A. M. (2024). Getting the phase consistent: The importance of phase description in balanced steady-state free precession MRI of multi-compartment systems. Magnetic resonance in medicine, 92(1), pp. 215-225. Wiley-Liss 10.1002/mrm.30033

Dotti, Prisca; Fernandez-Tenorio, Miguel; Janicek, Radoslav; Márquez-Neila, Pablo; Wullschleger, Marcel; Sznitman, Raphael; Egger, Marcel (2024). A deep learning-based approach for efficient detection and classification of local Ca²⁺ release events in Full-Frame confocal imaging. Cell calcium, 121 Elsevier 10.1016/j.ceca.2024.102893

Asangbeh-Kerman, Serra Lem; Davidović, Maša; Taghavi, Katayoun; Dhokotera, Tafadzwa; Manasyan, Albert; Sharma, Anjali; Jaquet, Antoine; Musick, Beverly; Twizere, Christella; Chimbetete, Cleophas; Murenzi, Gad; Tweya, Hannock; Muhairwe, Josephine; Wools-Kaloustian, Kara; Technau, Karl-Gunter; Anastos, Kathryn; Yotebieng, Marcel; Jousse, Marielle; Ezechi, Oliver; Orang'o, Omenge; ... (2024). Cervical cancer prevention and care in HIV clinics across sub-Saharan Africa: results of a facility-based survey. Journal of the International AIDS Society, 27(7), e26303. BioMed Central 10.1002/jia2.26303

Indra, Lara Isabelle; Giles, Stephanie; Alfsdotter, Clara; Errickson, David; Lösch, Sandra (27 June 2024). Porcine decomposition and what forensics can learn from it (Unpublished). In: Annual GCB Symposium. Bern. 27.6.2024.

Bátora, Dániel; Dienes-Nagy, Ágnes; Zeng, Liming; Gerber, Christian E.; Fischer, Jérôme P.; Lochner, Martin; Gertsch, Jürg (2024). Hypersensitive quantification of major astringency markers in food and wine by substoichiometric quenching of silicon-rhodamine conjugates. Food Chemistry: X, 23, p. 101592. Elsevier 10.1016/j.fochx.2024.101592

Walker, Cédric; Talawalla, Tasneem; Toth, Robert; Ambekar, Akhil; Rea, Kien; Chamian, Oswin; Fan, Fan; Berezowska, Sabina; Rottenberg, Sven; Madabhushi, Anant; Maillard, Marie; Barisoni, Laura; Horlings, Hugo Mark; Janowczyk, Andrew (2024). PatchSorter: a high throughput deep learning digital pathology tool for object labeling. NPJ digital medicine, 7(1) Nature Publishing Group 10.1038/s41746-024-01150-4

Olago, Victor; Nimako, Gideon; Bartels, Lina; Bohlius, Julia; Dhokotera, Tafadzwa; Egger, Matthias; Singh, Elvira; Sengayi-Muchengeti, Mazvita (2024). Cancer diagnostic service use in people living with HIV in South Africa: A cross-sectional study. PLoS ONE, 19(6), e0291897. Public Library of Science 10.1371/journal.pone.0291897

Stutzer, Diego; Hofmann, Martin; Eick, Sigrun; Scharp, Nicole; Burger, Jürgen; Niederhauser, Thomas (2024). In-Vitro Measurement of Forces During Debridement with a Piezoelectric Ultrasonic Periodontal Scaler. Oral health & preventive dentistry, 22, pp. 222-229. Quintessence Publishing 10.3290/j.ohpd.b5458595

Kundlacz, Cindy; Aldeia, Claudia; Eddoubaji, Yasmine; Campos-Madueno, Edgar I; Endimiani, Andrea (2024). Complete genome sequence of Pseudomonas canadensis strain Pcan-CK-23 isolated from Zophobas morio larvae. Microbiology resource announcements, 13(6), e0002324. American Society for Microbiology 10.1128/mra.00023-24

Croci, Eleonora; Hess, Hanspeter; Genter, Jeremy; Baum, Cornelia; Kovacs, Balazs Krisztian; Nüesch, Corina; Baumgartner, Daniel; Gerber, Kate; Müller, Andreas Marc; Mündermann, Annegret (2024). Severity of rotator cuff disorders and additional load affect fluoroscopy-based shoulder kinematics during arm abduction. Journal of orthopaedics and traumatology, 25(30) Springer 10.1186/s10195-024-00774-2

Indra, Lara Isabelle; Lösch, Sandra (8 June 2024). Mice, foxes and cadavers: Forensic implications from an experimental study (Unpublished). In: Annual Summer Meeting SGRM. Sion. 7.-8. June.

Spörri, Livia; Uldry, Anne-Christine; Kreuzer, Marco; Herzog, Elio L; Zinkernagel, Martin S; Unterlauft, Jan D; Zysset, Denise C (2024). Exploring the Ocular Surface Microbiome and Tear Proteome in Glaucoma. International journal of molecular sciences, 25(11) MDPI 10.3390/ijms25116257

Bindschedler, Annina; Schmuckli-Maurer, Jacqueline; Buchser, Sophie; Fischer, Tara D; Wacker, Rahel; Davalan, Tim; Brunner, Jessica; Heussler, Volker T (2024). LC3B labeling of the parasitophorous vacuole membrane of Plasmodium berghei liver stage parasites depends on the V-ATPase and ATG16L1. Molecular microbiology, 121(6), pp. 1095-1111. Wiley 10.1111/mmi.15259

Plähn, Nils Marc Joel; Safarkhanlo, Yasaman; Bonanno, Gabriele; Mackowiak, Adèle; Açıkgöz, Berk; Peper, Eva; Bastiaansen, Jessica (June 2024). Analytical T1, T2, proton density, and magnetic field inhomogeneity quantification in the brain using phase-cycled bSSFP. In: International Society for Magnetic Resonance in Medicine (ISMRM), Annual Meeting 2024. Singapore. 04 - 09 May 2024.

Gros, Romane; Rodríguez-Núñez, Omar; Felger, Leonard; Moriconi, Stefano; McKinley, Richard; Pierangelo, Angelo; Novikova, Tatiana; Vassella, Erik; Schucht, Philippe; Hewer, Ekkehard; Maragkou, Theoni (2024). Characterization of Polarimetric Properties in Various Brain Tumor Types Using Wide-Field Imaging Mueller Polarimetry. IEEE Transactions on Medical Imaging, p. 1. 10.1109/TMI.2024.3413288

Stillinovic, Martina; Sarangdhar, Mayuresh Anant; Andina, Nicola; Tardivel, Aubry; Greub, Frédéric; Bombaci, Giuseppe; Ansermet, Camille; Zatti, Marco; Saha, Dipanjali; Xiong, Jieyu; Sagae, Takeru; Yokogawa, Mariko; Osawa, Masanori; Heller, Manfred; Keogh, Adrian; Keller, Irene; Angelillo-Scherrer, Anne; Allam, Ramanjaneyulu (2024). Ribonuclease inhibitor and angiogenin system regulates cell type-specific global translation. Science Advances, 10(22) American Association for the Advancement of Science 10.1126/sciadv.adl0320

Lux, Janine; Sánchez García, Lucía; Chaparro Fernández, Patricia; Laloli, Laura; Licheri, Manon F.; Galley, Clement; Hermans, Peter W.M.; Croucher, Nicholas J.; Veening, Jan-Willem; Dijkman, Ronald; Straume, Daniel; Hathaway, Lucy J. (2024). AmiA and AliA peptide ligands, found in Klebsiella pneumoniae, are imported into pneumococci and alter the transcriptome. Scientific reports, 14 Springer Nature 10.1038/s41598-024-63217-2

Jandrasits, Damian; Züst, Roland; Siegrist, Denise; Engler, Olivier B; Weber, Benjamin; Schmidt, Kristina M; Jonsdottir, Hulda R (2024). Third-generation smallpox vaccines induce low-level cross-protecting neutralizing antibodies against Monkeypox virus in laboratory workers. Heliyon, 10(10) Elsevier 10.1016/j.heliyon.2024.e31490

Augsburger, Philipp; Liimatta, Jani; Flück, Christa E (2024). Update on Adrenarche - Still a Mystery. The journal of clinical endocrinology and metabolism, 109(6), pp. 1403-1422. Oxford University Press 10.1210/clinem/dgae008

Rietmann, Stefan J; Lange, Anja; Soto, Sara; Thom, Nina; Manz, Eberhard; Jagannathan, Vidhya; Mayer, Ursula; Leeb, Tosso (2024). KRT5 in-frame deletion in a family of German Shepherd dogs with split paw pad disease resembling localized epidermolysis bullosa simplex in human patients. Animal genetics, 55, pp. 692-696. Wiley 10.1111/age.13444

Bermudez-Lekerika, Paola; Crump, Katherine B; Wuertz-Kozak, Karin; Le Maitre, Christine L; Gantenbein, Benjamin (2024). Sulfated Hydrogels as Primary Intervertebral Disc Cell Culture Systems. Gels, 10(5) MDPI 10.3390/gels10050330

Yakubu, Jibira; Pandey, Amit V (2024). Innovative Delivery Systems for Curcumin: Exploring Nanosized and Conventional Formulations. Pharmaceutics, 16(5) MDPI 10.3390/pharmaceutics16050637

Morandi, Sophia C; Herzog, Elio L; Munk, Marion; Kreuzer, Marco; Largiadèr, Carlo R; Wolf, Sebastian; Zinkernagel, Martin; Zysset-Burri, Denise C (2024). The gut microbiome and HLA-B27-associated anterior uveitis: a case-control study. Journal of neuroinflammation, 21(120) BioMed Central 10.1186/s12974-024-03109-4

Gerber, Markus Daniel (2024). Msp1 in Trypanosoma brucei mitochondrial quality control (Unpublished). (Dissertation, Department of Chemistry, Biochemistry and Pharmaceutical Sciences, Faculty of Science)

Griss, Silja Anna; Knific, Tanja; Buzzell, Anne; Carmo, Luís Pedro; Schüpbach-Regula, Gertraud; Meylan, Mireille; Ocepek, Matjaž; Thomann, Beat (2024). A scoping review on associations between paratuberculosis and productivity in cattle. Frontiers in veterinary science, 11 Frontiers Media 10.3389/fvets.2024.1352623

Yimthin, Thatcha; Phunpang, Rungnapa; Wright, Shelton W; Thiansukhon, Ekkachai; Chaisuksant, Seksan; Chetchotisakd, Ploenchan; Tanwisaid, Kittisak; Chuananont, Somchai; Morakot, Chumpol; Sangsa, Narongchai; Silakun, Wirayut; Chayangsu, Sunee; Buasi, Noppol; Lertmemongkolchai, Ganjana; Chantratita, Narisara; West, T Eoin (2024). Lack of Association of TLR1 and TLR5 Coding Variants with Mortality in a Large Multicenter Cohort of Melioidosis Patients. The American journal of tropical medicine and hygiene, 110(5), pp. 994-998. American Society of Tropical Medicine and Hygiene 10.4269/ajtmh.23-0381

Barata, Isabel S; Rueff, José; Kranendonk, Michel; Esteves, Francisco (2024). Pleiotropy of Progesterone Receptor Membrane Component 1 in Modulation of Cytochrome P450 Activity. Journal of xenobiotics, 14(2), pp. 575-603. MDPI 10.3390/jox14020034

Safari, Fatemeh; Yeoh, Wen Jie; Perret-Gentil, Saskia; Klenke, Frank; Dolder, Silvia; Hofstetter, Wilhelm; Krebs, Philippe (2024). SHIP1 deficiency causes inflammation-dependent retardation in skeletal growth. Life science alliance, 7(5) EMBO Press 10.26508/lsa.202302297

Açıkgöz, Berk Can; Sainz Martinez, Cristina; Mackowiak, Adele; Plähn, Nils M. J.; Safarkhanlo, Yasaman; Bonanno, Gabriele; Peper, Eva Sophia; Jorge, João; Bastiaansen, Jessica (May 2024). Simultaneous brain susceptibility, T1 and T2 quantification at 7T with phase-cycled balanced steady-state free precession. In: International Society for Magnetic Resonance in Medicine (ISMRM), Annual Meeting (ISMRM 2024). Singapore. 04-09 May 2024.

Nguyên, Tâm Johan; Hilbert, Tom; Marques, José; Açıkgöz, Berk Can; Kreis, Roland; Bastiaansen, Jessica AM; Kober, Tobias; Bonanno, Gabriele (May 2024). Simultaneous T1 and T2 mapping of the brain with accelerated QuantoRAGE using optimized sequence parameters and fast neuralnetwork fitting. In: International Society for Magnetic Resonance in Medicine (ISMRM), Annual Meeting. Singapore. 04 -09 May 2024.

Safarkhanlo, Yasaman; Boscolo Berto, Martina; Spano, Giancarlo; Schütze, Jonathan; Stark, Anselm W.; Bastiaansen, Jessica AM; Gräni, Christoph (May 2024). Determining the Reproducibility and Reliability of 2D- and 4D flow MRI Mitral Valve Regurgitation Quantification Methods. In: International Society for Magnetic Resonance in Medicine (ISMRM), Annual Meeting 2024. Singapore. 04 - 09 May 2024.

Zhang, Ting; Ambrodji, Alisa; Huang, Huixing; Bouchonville, Kelly J; Etheridge, Amy S; Schmidt, Remington E; Bembenek, Brianna M; Temesgen, Zoey B; Wang, Zhiquan; Innocenti, Federico; Stroka, Deborah; Diasio, Robert B; Largiadèr, Carlo R; Offer, Steven M (2024). Germline cis variant determines epigenetic regulation of the anti-cancer drug metabolism gene dihydropyrimidine dehydrogenase (DPYD). eLife, 13 eLife Sciences Publications 10.7554/eLife.94075

Chicca, Andrea; Batora, Daniel; Ullmer, Christoph; Caruso, Antonello; Fingerle, Jürgen; Hartung, Thomas; Degen, Roland; Müller, Matthias; Grether, Uwe; Pacher, Pal; Gertsch, Jürg (29 April 2024). A highly potent, orally bioavailable pyrazole-derived cannabinoid CB2 receptor-selective full agonist for in vivo studies. (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2024.04.26.591311

Dawoody Nejad, Ladan; Annese, Tiziana; Ribatti, Domenico (2024). Lysosomal diacylglycerol pyrophosphate phosphatase is not essential in Trypanosoma brucei. Molecular biology reports, 51(578) Springer 10.1007/s11033-024-09547-w

Bornemann, Karoline-Marie; Obrist, Dominik (2024). Instability mechanisms initiating laminar–turbulent transition past bioprosthetic aortic valves. Journal of fluid mechanics, 985(A41) Cambridge University Press 10.1017/jfm.2024.309

Bátora, Daniel; Fischer, Jérôme P.; Kaderli, Reto M.; Varga, Máté; Lochner, Martin; Gertsch, Jürg (2024). Silicon-Rhodamine Functionalized Evocalcet Probes Potently and Selectively Label Calcium Sensing Receptors In Vitro, In Vivo, and Ex Vivo. ACS pharmacology & translational science, 7(5), pp. 1557-1570. ACS Publications 10.1021/acsptsci.4c00096

Rauscher, Robert; Eggers, Cristian; Dimitrova-Paternoga, Lyudmila; Shankar, Vaishnavi; Rosina, Alessia; Cristodero, Marina; Paternoga, Helge; Wilson, Daniel N; Leidel, Sebastian A; Polacek, Norbert (2024). Evolving precision: rRNA expansion segment 7S modulates translation velocity and accuracy in eukaryal ribosomes. Nucleic acids research, 52(7), pp. 4021-4036. Oxford University Press 10.1093/nar/gkae067

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Akshay, Akshay; Hashemi Gheinani, Ali; Besic, Mustafa; Braga, Sophie; Uldry, Anne-Christine; Heller, Manfred; Rehrauer, Hubert; Fournier, Catharine Aquino; Burkhard, Fiona C; Monastyrskaya, Katia (2024). De-obstruction of bladder outlet in humans reverses organ remodelling by normalizing the expression of key transcription factors. BMC urology, 24(33) BMC 10.1186/s12894-024-01417-8

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Perez-Shibayama, Christian; Gil-Cruz, Cristina; Cadosch, Nadine; Lütge, Mechthild; Cheng, Hung-Wei; De Martin, Angelina; Frischmann, Kira; Joachimbauer, Anna; Onder, Lucas; Papadopoulou, Iliana; Papadopoulou, Chrysa; Ring, Sandra; Krebs, Philippe; Vu, Vivian P.; Nägele, Matthias P.; Rossi, Valentina A.; Parianos, Danaë; Zsilavecz, Valentin W.; Cooper, Leslie T.; Flammer, Andreas; ... (2024). Bone morphogenic protein-4 availability in the cardiac microenvironment controls inflammation and fibrosis in autoimmune myocarditis. Nature cardiovascular research Springer Nature 10.1038/s44161-024-00432-0

Imhof, Dennis; Hänggeli, Kai Pascal Alexander; Ferreira de Sousa, Maria Cristina; Vigneswaran, Anitha; Hofmann, Larissa; Amdouni, Yosra; Boubaker, Ghalia; Müller, Joachim; Hemphill, Andrew (2024). Working towards the development of vaccines and chemotherapeutics against neosporosis—With all of its ups and downs—Looking ahead. Advances in Parasitology, 124, pp. 91-154. Elsevier 10.1016/bs.apar.2024.01.001

Schütz, Sara Doina; Brackmann, Maximilian; Liechti, Nicole; Moser, Michel; Wittwer, Matthias; Bruggmann, Rémy (2024). Functional characterization of Francisella tularensis subspecies holarctica genotypes during tick cell and macrophage infections using a proteogenomic approach. Frontiers in cellular and infection microbiology, 14 Frontiers 10.3389/fcimb.2024.1355113

Braun, Sandra (2024). Evaluating the Usefulness of CT Data for Trauma Analysis and Sex Estimation (Unpublished). (Dissertation, Institute of Forensic Medicine, Faculty of Medicine)

Eddoubaji, Yasmine; Aldeia, Claudia; Campos-Madueno, Edgar I.; Moser, Aline I.; Kundlacz, Cindy; Perreten, Vincent; Hilty, Markus; Endimiani, Andrea (2024). A new in vivo model of intestinal colonization using Zophobas morio larvae: testing hyperepidemic ESBL- and carbapenemase-producing Escherichia coli clones. Frontiers in Microbiology, 15 Frontiers 10.3389/fmicb.2024.1381051

Johny, Alex; Janczak, Andrew M; Nordgreen, Janicke; Toscano, Michael J.; Stratmann, Ariane (2024). Mind the ramp: Association between early life ramp use and spatial cognition in laying hen pullets. PLoS ONE, 19(4), e0302454. Public Library of Science 10.1371/journal.pone.0302454

Laagland, L. T.; Poramba Liyanage, D. W. L.; Bensadoun, P.; Soubeyrand, M.; Desprat, R.; Camus, A.; Lemaitre, J.; Gantenbein, B.; Tryfonidou, M. A. (2024). Employing epigenetic memory and native instructive stimuli to stimulate iPS-NLC differentiation (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milanoo, Italy. 31 May 2024.

Gantenbein, Benjamin; Oswald, Katharina AC; Erbach, Georg F; Croft, Andreas S; Bermudez Lekerika, Paola; Strunz, Franziska; Bigdon, Sebastian; Albers, Christoph (2024). The Bone Morphogenetic Protein 2 Analogue L51P Enhances Spinal Fusion in Combination with BMP2 in an In Vivo Rat Tail Model (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milano, Italy. 31 May 2024.

Stirnimann, Anja; Schlagenhof, Leon Max; Gantenbein, Benjamin; Ille, F. (2024). A comparative analysis of tie2-positive IVD progenitor cells in single-cell and bulk transcriptomics. (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milano. 27-31 May 2024.

Chen, Shuimu; Croft, Andreas S.; Bigdon, Sebastian; Li, Zhen; Albers, Christoph E; Crump, Katherine B.; Bermudez, Paola; Gantenbein, Benjamin (2024). Conditioned medium of intervertebral disc cells inhibits osteogenesis on autologous bone-marrow-derived mesenchymal stromal cells and osteoblasts (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milano, Italy. 29 May 2024.

Rüttimann, Silvan; Schlagenhof, Leon; Ille, Fabian; Gantenbein, Benjamin (2024). Exploring a Novel Spheroid 3D Cell Culture System for Tie2+ Nucleus Pulposus Cells of the Intervertebral Disc (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milano. 31 May 2024.

Torabi Rahvar, Parisa; Schlagenhof, Leon; Abdekhodaie, Mohammad J.; Gantenbein, Benjamin (2024). Oral Presentation: Injectable cell encapsulated hyaluronic acid microgels for nucleus pulposus regeneration (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milano, Italy. 29 May 2024.

Nüesch, A.; Ferri, M. P.; Kanelis, E.; Breakwell, L.; Alexopoulus, L. G.; Wiliams, F.; Gantenbein, B.; Lacey, M.; Le Maitre, C. L. (2024). Cutibacterium acnes is present in non-herniated human discs; its positivity rate correlates with the patients age (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milano, Italy. 29 May 2024.

Crump, Katherine; de Graaf, Kim; Bermudez Lekerika, Paola; Le Maitre, Christine; Noailly, Jérôme; Gantenbein, Benjamin (2024). Investigation of the combined effects of a catabolic microenvironment and complex mechanical loading on intervertebral disc degeneration (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024. Milano, Italy. 31.5.2024.

Tseranidou, S.; Segarra-Queralt, M.; Kanelis, E.; Bermudez, Paola; Alexopoulos, L.; Gantenbein, Benjamin; Le Maitre, C. L.; Piñero, J.; Noailly, J. (2024). Proteomics analysis assessment through a regulatory network model (Unpublished). In: 50th International Society for the Study of the Lumbar Spine Annual Meeting 2024.

Zaika, Viktor; Prakash, Meher K; Cheng, Chih-Yuan; Schlander, Michael; Lang, Brian M; Beerenwinkel, Niko; Sonnenberg, Amnon; Krupka, Niklas; Misselwitz, Benjamin; Poleszczuk, Jan (2024). Optimal timing of a colonoscopy screening schedule depends on adenoma detection, adenoma risk, adherence to screening and the screening objective: A microsimulation study. PLoS ONE, 19(e0304374) Public Library of Science 10.1371/journal.pone.0304374

Crump, Katherine B.; de Graaf, Kim; Bermudez-Lekerika, Paola; Le Maitre, Christine; Noailly, Jérôme; Gantenbein, Benjamin (2024). Complex mechanical loading and inflammation in intervertebral disc degeneration (Unpublished). In: 29th Congress of the European Society of Biomechanics. 3 July 2024.

Crump, Katherine B.; Segarra-Queralt, Maria; Bermudez-Lekerika, Paola; Geris, Liesbet; Noailly, Jérôme; Gantenbein, Benjamin (2024). Effects of compression and TNF on human effects of compression on human cartilaginous endplate cells in 3D agarose culture (Unpublished). In: 29th Congress of the European Society of Biomechanics. 3 July 2024.

Davidović, Maša; Dhokotera, Tafadzwa; Dos-Santos-Silva, Isabel; Bohlius, Julia; Sengayi-Muchengeti, Mazvita (2024). Breast cancer in women by HIV status: A report from the South African National Cancer Registry. PLoS ONE, 19(6) Public Library of Science 10.1371/journal.pone.0305274

Zhu, Xilei; Sculean, Anton; Eick, Sigrun (2024). In-vitro effects of different hyaluronic acids on periodontal biofilm-immune cell interaction. Frontiers in cellular and infection microbiology, 14 Frontiers 10.3389/fcimb.2024.1414861

Hubacher, Valentin; Egle, Manuel; Graf, Selianne; Arnold, Maria; Segiser, Adrian; Sanz, Maria Nieves; Casoni, Daniela; Garcia Casalta, Luisana; Nettelbeck, Kay; Mihalj, Maks; Siepe, Matthias; Kadner, Alexander; Longnus, Sarah (2024). Open- vs. closed-chest pig models of donation after circulatory death. Frontiers in cardiovascular medicine, 11 Frontiers 10.3389/fcvm.2024.1325160

Küper, Alina T; Kersting, David; Telli, Tugce; Herrmann, Ken; Rominger, Axel; Afshar-Oromieh, Ali; Lopes, Leonor; Karkampouna, Sofia; Shi, Kuangyu; Kim, Moon; Hadaschik, Boris; Darr, Christopher; Umutlu, Lale; Fendler, Wolfgang P; Seifert, Robert (2024). PSMA-PET follow-up to assess response in patients not receiving PSMA therapy: Is there value beyond localization of disease? Theranostics, 14(9), pp. 3623-3633. Ivyspring International 10.7150/thno.96738

Montalcini, Camille M; Toscano, Michael J; Asher, Lucy; Petelle, Matthew B (2024). Keel bone fractures affect laying hens' mobility, but no evidence for reciprocal effects. PLoS ONE, 19(7) Public Library of Science 10.1371/journal.pone.0306384

Jetishi, Clirim; Balmer, Erina A; Berger, Bianca M; Faso, Carmen; Ochsenreiter, Torsten (2024). Expansion of metabolically labelled endocytic organelles and cytoskeletal cell structures in Giardia lamblia using optimised U-ExM protocols. Microbial cell, 11, pp. 198-206. Shared Science Publishers OG 10.15698/mic2024.06.825

Tascon Morales, Sergio; Márquez Neila, Pablo; Sznitman, Raphael (2024). Targeted Visual Prompting for Medical Visual Question Answering (Submitted). In: The Third Workshop on Applications of Medical AI (AMAI). Marrakesh, Morocco. October 6 , 2024.

Rodella, Chiara; Lazaridi, Symela; Lemmin, Thomas (2024). TemBERTure: advancing protein thermostability prediction with deep learning and attention mechanisms. Bioinformatics advances, 4(1) Oxford University Press 10.1093/bioadv/vbae103

Petrucci, Mariafrancesca; De Brot, Simone; Casoni, Daniela (2024). Case report: Side effects of etomidate in propylene glycol in five Göttingen Minipigs. Frontiers in veterinary science, 11 Frontiers Media 10.3389/fvets.2024.1376604

Vautrin, Antoine; Thierrin, Raphael; Wili, Patrik; Voumard, Benjamin; Klingler, Samuel; Chappuis, Vivianne; Varga, Peter; Zysset, Philippe (2024). Homogenized finite element simulations can predict the primary stability of dental implants in human jawbone. Journal of the mechanical behavior of biomedical materials, p. 106688. Elsevier 10.1016/j.jmbbm.2024.106688

2023

Mostacci, Nadja; Wüthrich, Tsering Monika; Siegwald, Léa; Kieser, Silas; Steinberg, Ruth; Sakwinska, Olga; Latzin, Philipp; Korten, Insa; Hilty, Markus (2023). Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome. mSystems, 8(6), e0072423. American Society for Microbiology 10.1128/msystems.00724-23

Maximiano Sousa, Filipe; Warembourg, Charlotte; Abakar, Mahamat Fayiz; Alvarez, Danilo; Berger-Gonzalez, Monica; Odoch, Terence; Wera, Ewaldus; Chitnis, Nakul; Cunha Silva, Laura; Alobo, Grace; Sikko, Maria M; Roquel, Pablo; Hernández, Alexis Leonel López; Dürr, Salome (2023). Investigation of optimized observation periods for estimating a representative home range of free-roaming domestic dogs. Scientific Reports, 13(1), p. 22750. Nature Publishing Group 10.1038/s41598-023-49851-2

Indra, Lara; Schyma, Christian; Lösch, Sandra (2023). Cat and dog scavenging at indoor forensic scenes: strategies for documentation and detection. Forensic science, medicine, and pathology Springer 10.1007/s12024-023-00762-8

Probst, Lukas; Laloli, Laura; Licheri, Manon Flore; Licheri, Matthias; Gultom, Mitra; Holwerda, Melle; V'kovski, Philip; Dijkman, Ronald (2023). Generation and Characterization of an Influenza D Reporter Virus. Viruses, 15(12), p. 2444. MDPI 10.3390/v15122444

Kaethner, Marc; Rennar, Georg; Gallinger, Tom; Kämpfer, Tobias; Hemphill, Andrew; Mäder, Patrick; Luque-Gómez, Ana; Schlitzer, Martin; Lundström Stadelmann, Britta (2023). In Vitro Activities of Dithiocarbamate Derivatives against Echinococcus multilocularis Metacestode Vesicles. Tropical medicine and infectious disease, 8(12) MDPI 10.3390/tropicalmed8120517

Asparuhova, Maria B; Song, Xiaoqing; Riedwyl, Dominic; van Geest, Geert; Bosshardt, Dieter D; Sculean, Anton (2023). Differential molecular profiles and associated functionalities characterize connective tissue grafts obtained at different locations and depths in the human palate. International journal of oral science, 15(1), p. 57. Sprinter Nature 10.1038/s41368-023-00260-1

Cazzin, Stefania; Jandrasits, Damian; Liechti, Nicole; Flacio, Eleonora; Beuret, Christian; Engler, Olivier; Guidi, Valeria (2023). First Detection of West Nile Virus Lineage 2 in Mosquitoes in Switzerland, 2022. Pathogens, 12(12) MDPI AG 10.3390/pathogens12121424

Urzì, Christian; Meyer, Christoph; Nuoffer, Jean-Marc; Vermathen, Peter (2023). Methods for Oxygen Determination in an NMR Bioreactor as a Surrogate Marker for Metabolomic Studies in Living Cell Cultures. Analytical chemistry, 95(48), pp. 17486-17493. American Chemical Society 10.1021/acs.analchem.3c02314

Tandon, Disha; Dong, Yuan; Hapfelmeier, Siegfried Hektor (5 December 2023). Pipeline for species-resolved full-length16S rRNA amplicon nanopore sequencing analysis of low-complexity bacterial microbiota (BioRxiv). Cold Spring Harbor Laboratory 10.1101/2023.12.05.570138

Balmer, Erina A; Wirdnam, Corina D; Faso, Carmen (2023). A core UPS molecular complement implicates unique endocytic compartments at the parasite-host interface in Giardia lamblia. Virulence, 14(1), p. 2174288. Taylor & Francis 10.1080/21505594.2023.2174288

Rebsamen, Michael; Jin, Baudouin Zongxin; Klail, Tomas; De Beukelaer, Sophie; Barth, Rike; Rezny-Kasprzak, Beata; Ahmadli, Uzeyir; Vulliemoz, Serge; Seeck, Margitta; Schindler, Kaspar; Wiest, Roland; Radojewski, Piotr; Rummel, Christian (2023). Clinical Evaluation of a Quantitative Imaging Biomarker Supporting Radiological Assessment of Hippocampal Sclerosis. Clinical neuroradiology, 33(4), pp. 1045-1053. Springer-Verlag 10.1007/s00062-023-01308-9

Yeoh, Wen Jie; Krebs, Philippe (2023). SHIP1 and its role for innate immune regulation - novel targets for immunotherapy. European journal of immunology, 53(12), e2350446. Wiley-VCH 10.1002/eji.202350446

Kochetkova, Tatiana; Hanke, Markus S; Indermaur, Michael; Groetsch, Alexander; Remund, Stefan; Neuenschwander, Beat; Michler, Johann; Siebenrock, Klaus A; Zysset, Philippe; Schwiedrzik, Jakob (2023). Composition and micromechanical properties of the femoral neck compact bone in relation to patient age, sex and hip fracture occurrence. Bone, 177, p. 116920. Elsevier 10.1016/j.bone.2023.116920

Krenger, Pascal S; Sobczak, Jan; Paolucci, Marta; Kündig, Thomas M; Johansen, Pål; Vogel, Monique; Bachmann, Martin F (2023). BALB/c and C3H mice are both suitable as peanut allergy models. Clinical and experimental allergy, 53(12), pp. 1310-1313. Wiley 10.1111/cea.14398

Deng, Haibin; Ge, Huixiang; Dubey, Christelle; Losmanova, Tereza; Medova, Michaela; Konstantinidou, Georgia; Mutlu, Seyran Mathilde; Birrer, Fabienne Esther; Brodie, Tess Melinda; Stroka, Deborah; Wang, Wenxiang; Peng, Ren-Wang; Dorn, Patrick; Marti, Thomas Michael (2023). An optimized protocol for the generation and monitoring of conditional orthotopic lung cancer in the KP mouse model using an adeno-associated virus vector compatible with biosafety level 1. Cancer immunology, immunotherapy : CII, 72(12), pp. 4457-4470. Springer 10.1007/s00262-023-03542-z

Ramosaj, Adhuresa; Singhal, Palak; Schaller, André; Laemmle, Alexander (2023). Induced pluripotent stem cell technology as diagnostic tool in patients with suspected ornithine transcarbamylase deficiency lacking genetic confirmation. Molecular genetics and metabolism reports, 37(101007), p. 101007. Elsevier 10.1016/j.ymgmr.2023.101007

Indermaur, Michael; Casari, Daniele; Kochetkova, Tatiana; Willie, Bettina M; Michler, Johann; Schwiedrzik, Jakob; Zysset, Philippe (2023). Tensile Mechanical Properties of Dry Cortical Bone Extracellular Matrix: A Comparison Among Two Osteogenesis Imperfecta and One Healthy Control Iliac Crest Biopsies. JBMR plus, 7(12), e10826. Wiley 10.1002/jbm4.10826

Rojas Velazquez, Maria Natalia; Therkelsen, Søren; Pandey, Amit V (2023). Exploring Novel Variants of the Cytochrome P450 Reductase Gene (POR) from the Genome Aggregation Database by Integrating Bioinformatic Tools and Functional Assays. Biomolecules, 13(12) MDPI 10.3390/biom13121728

Schuler, Cordelia; Indra, Lara Isabelle; Lösch, Sandra (25 November 2023). PMI Estimation Using Graft-Fixation Devices in ACL Reconstruction (Unpublished). In: Swiss Society of Anthropology Annual Meeting 2023. Zürich. 25. November 2023.

Braun, S; Schwendener, N; Kanz, F; Lösch, S; Milella, M (25 November 2023). Dry bone and virtual modality interchangeability for the estimation of sex on the human pelvis and skull (Unpublished). In: Schweizerische Gesellschaft für Anthropologie. University of Zurich Irchel.

Stojanovski, Klement; Gheorghe, Ioana; Lenart, Peter; Lanjuin, Anne; Mair, William B; Towbin, Benjamin D (2023). Maintenance of appropriate size scaling of the C. elegans pharynx by YAP-1. Nature Communications, 14(1), p. 7564. Springer Nature 10.1038/s41467-023-43230-1

Atchou, Kodzo; Berger, Bianca Manuela; Heussler, Volker; Ochsenreiter, Torsten (2023). Pre-gelation staining expansion microscopy (PS-ExM) for visualisation of the Plasmodium liver stage. Journal of cell science, 136(22) Company of Biologists 10.1242/jcs.261377

Sprague, Daniel J; Kaethner, Marc; Park, Sang-Kyu; Rohr, Claudia M; Harris, Jade L; Maillard, David; Spangenberg, Thomas; Lundström-Stadelmann, Britta; Marchant, Jonathan S (2023). The Anthelmintic Activity of Praziquantel Analogs Correlates with Structure-Activity Relationships at TRPMPZQ Orthologs. ACS medicinal chemistry letters, 14(11), pp. 1537-1543. American Chemical Society 10.1021/acsmedchemlett.3c00350

Timpanaro, Andrea; Piccand, Caroline; Dzhumashev, Dzhangar; Anton Joseph, Stenija; Robbi, Andrea; Moser, Janine; Rössler, Jochen; Bernasconi, Michele (2023). CD276-CAR T cells and Dual-CAR T cells targeting CD276/FGFR4 promote rhabdomyosarcoma clearance in orthotopic mouse models. Journal of experimental & clinical cancer research, 42(1), p. 293. BioMed Central 10.1186/s13046-023-02838-3

Bannasch, Danika L; Oertle, Danielle T; Vo, Julia; Batcher, Kevin L; Stern, Joshua A; Kaplan, Joanna L; Li, Ronald H L; Madden, Indiana E; Christen, Matthias; Leeb, Tosso; Joshi, Nikhil (2023). Naturally occurring canine laminopathy leading to a dilated and fibrosing cardiomyopathy in the Nova Scotia Duck Tolling Retriever. Scientific Reports, 13(1), p. 19077. Nature Publishing Group 10.1038/s41598-023-46601-2

Amodeo, Simona; Bregy, Irina; Ochsenreiter, Torsten (2023). Mitochondrial genome maintenance - the kinetoplast story. FEMS microbiology reviews, 47(6) Blackwell Publishing Ltd 10.1093/femsre/fuac047

Dziadosz, Martyna; Rizzo, Rudy; Kyathanahally, Sreenath P; Kreis, Roland (2023). Denoising single MR spectra by deep learning: Miracle or mirage? Magnetic resonance in medicine, 90(5), pp. 1749-1761. Wiley 10.1002/mrm.29762

Braun, Sandra; Schwendener, Nicole; Kanz, Fabian; Lösch, Sandra; Milella, Marco (2023). What we see is what we touch? Sex estimation on the pelvis in virtual anthropology. International journal of legal medicine, 137(6), pp. 1839-1852. Springer 10.1007/s00414-023-03034-w

Gerber, Markus; Suppanz, Ida; Oeljeklaus, Silke; Niemann, Moritz; Käser, Sandro; Warscheid, Bettina; Schneider, André; Dewar, Caroline E (2023). A Msp1-containing complex removes orphaned proteins in the mitochondrial outer membrane of T. brucei. Life science alliance, 6(11) EMBO Press 10.26508/lsa.202302004

Guyer, Gian; Mueller, Silvan; Wyss, Yanick; Bertholet, Jenny; Schmid, Remo; Stampanoni, Marco F M; Manser, Peter; Fix, Michael K (2023). Technical note: A collision prediction tool using Blender. Journal of applied clinical medical physics, 24(11), e14165. American Association of Physicists in Medicine 10.1002/acm2.14165

Hong, Jimin; Lu, Jiaying; Liu, Fengtao; Wang, Min; Li, Xinyi; Clement, Christoph; Lopes, Leonor; Brendel, Matthias; Rominger, Axel; Yen, Tzu-Chen; Guan, Yihui; Tian, Mei; Wang, Jian; Zuo, Chuantao; Shi, Kuangyu (2023). Uncovering distinct progression patterns of tau deposition in progressive supranuclear palsy using [18F]Florzolotau PET imaging and subtype/stage inference algorithm. EBioMedicine, 97(104835), p. 104835. Elsevier 10.1016/j.ebiom.2023.104835

Andonie, Raphael R.; Wimmer, Wilhelm; Wildhaber, Reto A; Caversaccio, Marco; Weder, Stefan (2023). Real-Time Feature Extraction From Electrocochleography With Impedance Measurements During Cochlear Implantation Using Linear State-Space Models. IEEE transactions on bio-medical engineering, 70(11), pp. 3137-3146. Institute of Electrical and Electronics Engineers 10.1109/TBME.2023.3276993

Lam, Yin Ting; Papon, Jean-François; Alexandru, Mihaela; Anagiotos, Andreas; Armengot, Miguel; Boon, Mieke; Burgess, Andrea; Caversaccio, Nathalie; Crowley, Suzanne; Dheyauldeen, Sinan Ahmed D; Emiralioglu, Nagehan; Erdem, Ela; Gogh, Christine van; Gokdemir, Yasemin; Gunaydın, Onder; Haarman, Eric G; Harris, Amanda; Hayn, Isolde; Ismail-Koch, Hasnaa; Karadag, Bulent; ... (2023). Lack of Correlation of Sinonasal and Otologic Reported Symptoms With Objective Measurements Among Patients With Primary Ciliary Dyskinesia: An International Study. Clinical and experimental otorhinolaryngology, 16(4), pp. 407-412. Korean Society of Otorhinolaryngology-Head and Neck Surgery 10.21053/ceo.2023.01130

Indra, Lara; Lösch, Sandra; Errickson, David; Finaughty, Devin (2023). Forensic experiments on animal scavenging: A systematic literature review on what we have and what we need. Forensic science international, 353, p. 111862. Elsevier Scientific Publ. Ireland 10.1016/j.forsciint.2023.111862

Guyer, Gian; Mueller, Silvan; Mackeprang, Paul-Henry; Frei, Daniel; Volken, Werner; Aebersold, Daniel M; Lössl, Kristina; Manser, Peter; Fix, Michael K (2023). Delivery time reduction for mixed photon-electron radiotherapy by using photon MLC collimated electron arcs. Physics in medicine and biology, 68(21) IOP Publishing 10.1088/1361-6560/ad021a

Garcia-Seyda, Nicolas; Song, Solene; Seveau de Noray, Valentine; David-Broglio, Luc; Matti, Christoph; Artinger, Marc; Dupuy, Florian; Biarnes-Pelicot, Martine; Valignat, Marie-Pierre; Legler, Daniel F; Bajénoff, Marc; Theodoly, Olivier (2023). Naive T lymphocytes chemotax long distance to CCL21 but not to a source of bioactive S1P. iScience, 26(10), p. 107695. Elsevier 10.1016/j.isci.2023.107695

Metekoua, Carole; Ruffieux, Yann; Olago, Victor; Dhokotera, Tafadzwa; Egger, Matthias; Bohlius, Julia; Rohner, Eliane; Muchengeti, Mazvita (2023). Decreasing Incidence of Conjunctival Squamous Cell Carcinoma in People with HIV in South Africa. Journal of the National Cancer Institute JNCI, 115(10), pp. 1213-1219. Oxford University Press 10.1093/jnci/djad119

Mahapatra, Dwarikanath; Jimeno Yepes, Antonio Jose; Kuanar, Shiba; Roy, Sudipta; Bozorgtabar, Behzad; Reyes, Mauricio; Ge, Zongyuan (8 October 2023). Class Specific Feature Disentanglement and Text Embeddings for Multi-label Generalized Zero Shot CXR Classification. In: International Conference on Medical Image Computing and Computer-Assisted Intervention. Lecture Notes in Computer Science: Vol. 14221 (pp. 276-286). Springer 10.1007/978-3-031-43895-0_26

Kamath, Amith; Willmann, Jonas; Andratschke, Nicolaus; Reyes, Mauricio (8 October 2023). Do We Really Need that Skip-Connection? Understanding Its Interplay with Task Complexity. In: International Conference on Medical Image Computing and Computer-Assisted Intervention. Lecture Notes in Computer Science: Vol. 14223 (pp. 302-311). Springer 10.1007/978-3-031-43901-8_29

Papapostolou, Irida; Bochen, Florian; Peinelt, Christine; Maldifassi, Maria Constanza (2023). A Simple and Fast Method for the Formation and Downstream Processing of Cancer-Cell-Derived 3D Spheroids: An Example Using Nicotine-Treated A549 Lung Cancer 3D Spheres. Methods and protocols, 6(5) MDPI AG 10.3390/mps6050094

Gagliardi, Paolo Armando; Grädel, Benjamin; Jacques, Marc-Antoine; Hinderling, Lucien; Ender, Pascal; Cohen, Andrew R; Kastberger, Gerald; Pertz, Olivier; Dobrzynski, Maciej (2023). Automatic detection of spatio-temporal signaling patterns in cell collectives. The Journal of cell biology, 222(10) Rockefeller Institute Press 10.1083/jcb.202207048

Santoni, Bastien Le Gars; Niggli, Luzia; Dolder, Silvia; Loeffel, Olivier; Sblendorio, Gabrielle; Maazouz, Yassine; Alexander, Duncan; Heuberger, Roman; Stähli, Christoph; Döbelin, Nicola; Bowen, Paul; Hofstetter, Wilhelm; Bohner, Marc (2023). Influence of the sintering atmosphere on the physico-chemical properties and the osteoclastic resorption of β-tricalcium phosphate cylinders. Acta biomaterialia, 169, pp. 566-578. Elsevier 10.1016/j.actbio.2023.08.012

Pitton, Melissa; Valente, Luca G; Oberhaensli, Simone; Casanova, Carlo; Sendi, Parham; Schnegg, Bruno; Jakob, Stephan M; Cameron, David R; Que, Yok-Ai; Fürholz, Monika (2023). Dynamics of bacterial pathogens at the driveline exit site in patients with ventricular assist devices: a prospective, observational, single-centre cohort study. The Journal of heart and lung transplantation, 42(10), pp. 1445-1454. Elsevier 10.1016/j.healun.2023.05.016

Kiener, Sarah; Åhman, Susanne; Jagannathan, Vidhya; Soto, Sara; Leeb, Tosso (2023). Heterozygous KRT10 missense variant in a Chihuahua with severe epidermolytic ichthyosis. Animal genetics, 54(5), pp. 652-654. Wiley 10.1111/age.13341

Remlinger, Jana; Bagnoud, Maud; Meli, Ivo; Massy, Marine; Linington, Christopher; Chan, Andrew; Bennett, Jeffrey L; Hoepner, Robert; Enzmann, Volker; Salmen, Anke (2023). Modelling MOG antibody-associated disorder and neuromyelitis optica spectrum disorder in animal models: Spinal cord manifestations. Multiple Sclerosis and Related Disorders, 78(104892), p. 104892. Elsevier 10.1016/j.msard.2023.104892

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Zbinden, Lukas; Catucci, Damiano; Suter, Yannick Raphael; Hulbert, Leona; Berzigotti, Annalisa; Brönnimann, Michael; Ebner, Lukas; Christe, Andreas; Obmann, Verena Carola; Sznitman, Raphael; Huber, Adrian Thomas (2023). Automated liver segmental volume ratio quantification on non-contrast T1-Vibe Dixon liver MRI using deep learning. European journal of radiology, 167, p. 111047. Elsevier 10.1016/j.ejrad.2023.111047

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Croft, AS; Fuhrer, J; Wöltje, M.; Gantenbein, B (2023). Creating tissue with intervertebral disc-like characteristics using gdf5 functionalized silk scaffolds and human mesenchymal stromal cells. European cells & materials eCM, 46, pp. 1-23. University of Wales 10.22203/eCM.v046a01

Crump, Katherine B.; Alminnawi, Ahmad; Bermudez-Lekerika, Paola; Compte, Roger; Gualdi, Francesco; McSweeney, Terence; Muñoz-Moya, Estefano; Nüesch, Andrea; Geris, Liesbet; Dudli, Stefan; Karppinen, Jaro; Noailly, Jérôme; Le Maitre, Christine; Gantenbein, Benjamin (2023). Cartilaginous endplates: A comprehensive review on a neglected structure in intervertebral disc research. JOR Spine, 6(4), e1294. Wiley 10.1002/jsp2.1294

Illi, Joël Alain; Ilic, Marc; Stark, Anselm Walter; Amstutz, Cornelia; Burger, Juergen; Zysset, Philippe; Haeberlin, Andreas; Gräni, Christoph (2023). Mechanical testing and comparison of porcine tissue, silicones and 3D-printed materials for cardiovascular phantoms. Frontiers in Bioengineering and Biotechnology, 11 Frontiers Media 10.3389/fbioe.2023.1274673

Werren, Joel P; Mostacci, Nadja; Gjuroski, Ilche; Holivololona, Lalaina; Troxler, Lukas J; Hathaway, Lucy J; Furrer, Julien; Hilty, Markus (2023). Carbon source-dependent capsule thickness regulation in Streptococcus pneumoniae. Frontiers in cellular and infection microbiology, 13(1279119), p. 1279119. Frontiers 10.3389/fcimb.2023.1279119

Açıkgöz, B. C.; Bastiaansen, J. (2023). Fraction estimation for two compartment systems with phase-cycled BSSFP. Magnetic resonance materials in physics, biology and medicine, 36(S1), S246-S247. Springer

Mischler, Dominic; Gueorguiev, Boyko; Windolf, Markus; Varga, Peter (2023). On the importance of accurate elasto-plastic material properties in simulating plate osteosynthesis failure. Frontiers in Bioengineering and Biotechnology, 11(1268787), p. 1268787. Frontiers Media 10.3389/fbioe.2023.1268787

Montalcini, Camille M; Petelle, Matthew B; Toscano, Michael J (2023). Commercial hatchery practices have long-lasting effects on laying hens' spatial behaviour and health. PLoS ONE, 18(12), e0295560. Public Library of Science 10.1371/journal.pone.0295560

Brechbühl, Daniel; Steiner, Leonie; Münger, Robin; Oesch, Gabriela; Piechowiak, Eike I.; Massatsch, Pia; Branca, Mattia; Sauermann, Mamatha; Datta, Alexandre N.; Fluss, Joel; Bigi, Sandra; Mallick, Andrew A.; Sinclair, Adriane; Hackenberg, Annette; Goeggel Simonetti, Barbara; Bellesme, Céline; Ram, Dipak; Knierim, Ellen; Bauder, Florian; Audic-Gérard, Frédérique; ... (2023). High Dose Steroids in Children with Stroke and Unilateral Focal Arteriopathy: A Multicenter Randomized Controlled Trial. Pediatric stroke, 6, pp. 21-42.

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Gantenbein, Benjamin; Oswald, Katharina A. C.; Bigdon, Sebastian F.; Erbach, Georg F.; Croft, Andreas S.; Bermudez-Lekerika, Paola; Strunz, Franziska; Rutsch, Niklas; Albers, Christoph E. (2023). The Bone Morphogenetic Protein L51P Enhances Spinal Fusion in Combination with BMP2 - An In Vivo Rat Spinal Fusion Model of the Elderly. In: 31st Annual Meeting of the European Orthopaedic Research Society. 27-29 September.

Beer, Patricia; Pauli, Chantal; Haberecker, Martina; Grest, Paula; Beebe, Erin; Fuchs, Daniel; Markkanen, Enni; Krudewig, Christiane; Nolff, Mirja Christine (2023). Cross-species evaluation of fibroblast activation protein alpha as potential imaging target for soft tissue sarcoma: a comparative immunohistochemical study in humans, dogs, and cats. Frontiers in oncology, 13, p. 1210004. Frontiers Research Foundation 10.3389/fonc.2023.1210004

2022

Akshay, Akshay; Katoch, Mitali; Abedi, Masoud; Shekarchizadeh, Navid; Besic, Mustafa; Burkhard, Fiona C; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2022). SpheroScan: a user-friendly deep learning tool for spheroid image analysis. GigaScience, 12 Oxford University Press 10.1093/gigascience/giad082

Akshay, Akshay; Abedi, Masoud; Shekarchizadeh, Navid; Burkhard, Fiona C; Katoch, Mitali; Bigger-Allen, Alex; Adam, Rosalyn M; Monastyrskaya, Katia; Hashemi Gheinani, Ali (2022). MLcps: machine learning cumulative performance score for classification problems. GigaScience, 12 Oxford University Press 10.1093/gigascience/giad108

Cameron, David R; Pitton, Melissa; Oberhaensli, Simone; Schlegel, Katja; Prod'hom, Guy; Blanc, Dominique S; Jakob, Stephan M; Que, Yok-Ai (2022). Parallel Evolution of Pseudomonas aeruginosa during a Prolonged ICU-Infection Outbreak. Microbiology spectrum, 10(6), e0274322. American Society for Microbiology 10.1128/spectrum.02743-22

Zbinden, Lukas; Catucci, Damiano; Suter, Yannick; Berzigotti, Annalisa; Ebner, Lukas; Christe, Andreas; Obmann, Verena Carola; Sznitman, Raphael; Huber, Adrian Thomas (2022). Convolutional neural network for automated segmentation of the liver and its vessels on non-contrast T1 vibe Dixon acquisitions. Scientific Reports, 12(1) Nature Publishing Group 10.1038/s41598-022-26328-2

Preti, Barbara; Rougier, Jean-Sébastien; Papapostolou, Irida; Bochen, Florian; Gerber, Christian E; Abriel, Hugues; Lochner, Martin; Peinelt, Christine (2022). Targeting Ion Channel TRPM4. CHIMIA, 76(12), pp. 1039-1044. Schweizerische Chemische Gesellschaft 10.2533/chimia.2022.1039

Horvat, Christian (2022). Density estimation on low-dimensional manifolds (Unpublished). (Dissertation)

Bagatella, Stefano; Haghayegh Jahromi, Neda; Monney, Camille; Polidori, Margherita; Gall, Flavio Max; Marchionatti, Emma; Serra, Fabienne; Riedl, Rainer; Engelhardt, Britta; Oevermann, Anna (2022). Bovine neutrophil chemotaxis to Listeria monocytogenes in neurolisteriosis depends on microglia-released rather than bacterial factors. Journal of neuroinflammation, 19(1), p. 304. BioMed Central 10.1186/s12974-022-02653-1

Weber, Samantha (2022). The Role of Stress in Neuropathophysiological Mechanisms of Functional Neurological Disorders (Unpublished). (Dissertation, University of Bern, Medicine)

Hess, Hanspeter; Gussarow, Philipp; Rojas, J Tomás; Weber, Stefan; Hayoz, Annabel; Zumstein, Matthias A.; Gerber, Kate (13 December 2022). Fully Automatic Analysis of Posterosuperior Full-Thickness Rotator Cuff Tears from MRI. In: Proceedings of The 20th Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery. 10.29007/fnjd

Carlevaro-Fita, Joana; Lanzós, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Johnson, Rory (2022). Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis. Communications biology, 5(1), p. 1347. Springer Nature 10.1038/s42003-022-03769-z

Vancura, Adrienne; Gutierrez, Alejandro H; Hennig, Thorben; Pulido-Quetglas, Carlos; Slack, Frank J; Johnson, Rory; Haefliger, Simon (2022). Is Evolutionary Conservation a Useful Predictor for Cancer Long Noncoding RNAs? Insights from the Cancer LncRNA Census 3. Non-Coding RNA, 8(6) MDPI 10.3390/ncrna8060082

Coluccia, Achille; Matti, Fabienne; Zhu, Xilei; Lussi, Adrian; Stähli, Alexandra; Sculean, Anton; Eick, Sigrun (2022). In Vitro Study on Green Propolis as a Potential Ingredient of Oral Health Care Products. Antibiotics, 11(12) MDPI 10.3390/antibiotics11121764

Beer, Julius; Crotta, Stefania; Breithaupt, Angele; Ohnemus, Annette; Becker, Jan; Sachs, Benedikt; Kern, Lisa; Llorian, Miriam; Ebert, Nadine; Labroussaa, Fabien; Nhu Thao, Tran Thi; Trueeb, Bettina Salome; Jores, Joerg; Thiel, Volker; Beer, Martin; Fuchs, Jonas; Kochs, Georg; Wack, Andreas; Schwemmle, Martin and Schnepf, Daniel (2022). Impaired immune response drives age-dependent severity of COVID-19. The Journal of experimental medicine, 219(12) Rockefeller Univ. Press 10.1084/jem.20220621

Doorenbos, Lars; Cavuoti, Stefano; Longo, Giuseppe; Brescia, Massimo; Sznitman, Raphael; Márquez-Neila, Pablo (3 December 2022). Generating astronomical spectra from photometry with conditional diffusion models (In Press). In: Machine Learning and the Physical Sciences.

Cunha Silva, Laura; Friker, Brian; Warembourg, Charlotte; Kanankege, Kaushi; Wera, Ewaldus; Berger-González, Monica; Alvarez, Danilo; Dürr, Salome (2022). Habitat selection by free-roaming domestic dogs in rabies endemic countries in rural and urban settings. Scientific Reports, 12(1), p. 20928. Nature Publishing Group 10.1038/s41598-022-25038-z

Virgilio, Tommaso; Bordini, Joy; Cascione, Luciano; Sartori, Giulio; Latino, Irene; Molina Romero, Daniel; Leoni, Cristina; Akhmedov, Murodzhon; Rinaldi, Andrea; Arribas, Alberto J; Morone, Diego; Seyed Jafari, S Morteza; Bersudsky, Marina; Ottolenghi, Aner; Kwee, Ivo; Chiaravalli, Anna Maria; Sessa, Fausto; Hunger, Robert E; Bruno, Antonino; Mortara, Lorenzo; ... (2022). Subcapsular sinus macrophages promote melanoma metastasis to the sentinel lymph nodes via an IL-1α-STAT3 axis. Cancer immunology research, 10(12), pp. 1525-1541. American Association for Cancer Research 10.1158/2326-6066.CIR-22-0225

Naef, Aileen C; Erne, Katja; Exl, Matthias Thomas; Nef, Tobias; Jeitziner, Marie-Madlen (2022). Visual and auditory stimulation for patients in the intensive care unit: A mixed-method study. Intensive & critical care nursing, 73(103306), p. 103306. Elsevier 10.1016/j.iccn.2022.103306

Moser, Aline I; Campos-Madueno, Edgar I; Perreten, Vincent; Endimiani, Andrea (2022). Genome stability during serial sub-culturing in hyperepidemic multidrug-resistant Klebsiella pneumoniae and Escherichia coli. Journal of global antimicrobial resistance, 31, pp. 152-161. Elsevier 10.1016/j.jgar.2022.08.014

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Voumard, Benjamin; Stefanek, Pia; Pretterklieber, Michael; Pahr, Dieter; Zysset, Philippe (2022). Influence of aging on mechanical properties of the femoral neck using an inverse method. Bone reports, 17(101638), p. 101638. Elsevier 10.1016/j.bonr.2022.101638

Campos-Madueno, Edgar I; Moser, Aline I; Jost, Géraldine; Maffioli, Carola; Bodmer, Thomas; Perreten, Vincent; Endimiani, Andrea (2022). Erratum to 'Carbapenemase-producing Klebsiella pneumoniae strains in Switzerland: human and non-human settings may share high-risk clones' [Journal of Global Antimicrobial Resistance 28 (2022) 206-215]. Journal of global antimicrobial resistance, 31(394), p. 394. Elsevier 10.1016/j.jgar.2022.08.020

Lux, Janine; Holivololona, Lalaina; San Millan Gutierrez, Raquel; Hilty, Markus; Ramette, Alban; Heller, Manfred; Hathaway, Lucy J (2022). AmiA and AliA peptide ligands are secreted by Klebsiella pneumoniae and inhibit growth of Streptococcus pneumoniae. Scientific reports, 12(1), p. 22268. Springer Nature 10.1038/s41598-022-26838-z

Singh, Aditi; Maurer-Alcalá, Xyrus X; Solberg, Therese; Haeussermann, Lilia; Gisler, Silvan; Ignarski, Michael; Swart, Estienne C; Nowacki, Mariusz (2022). Chromatin remodeling is required for sRNA-guided DNA elimination in Paramecium. The EMBO journal, 41(22), e111839. EMBO Press 10.15252/embj.2022111839

Parisi, Ludovica; Mockenhaupt, Carolin; Rihs, Silvia; Mansour, Farah; Katsaros, Christos; Degen, Martin (2022). Consistent downregulation of the cleft lip/palate-associated genes IRF6 and GRHL3 in carcinomas. Frontiers in oncology, 12(1023072), p. 1023072. Frontiers Research Foundation 10.3389/fonc.2022.1023072

Peters, Laureen; Howard, Judith; Leeb, Tosso; Mevissen, Meike; Graf, Rolf; Reding Graf, Theresia (12 November 2022). Identification Of Regenerating Island-Derived Protein 3E In Dogs. In: 2022 ACVP/ASVCP Annual Meeting.

Reichmuth, Martina L; Hodcroft, Emma B; Riou, Julien; Neher, Richard A; Hens, Niel; Althaus, Christian L (2022). Impact of cross-border-associated cases on the SARS-CoV-2 epidemic in Switzerland during summer 2020 and 2021. Epidemics, 41, p. 100654. Elsevier 10.1016/j.epidem.2022.100654

Raad, Nicole; Tandon, Disha; Hapfelmeier, Siegfried; Polacek, Norbert (2022). The stationary phase-specific sRNA FimR2 is a multifunctional regulator of bacterial motility, biofilm formation and virulence. Nucleic acids research, 50(20), pp. 11858-11875. Oxford University Press 10.1093/nar/gkac1025

Braun, Sandra; Indra, Lara; Lösch, Sandra; Milella, Marco (11 November 2022). Absence of evidence is not evidence of absence: Perimortem skeletal sharp force trauma on postmortem CT (Unpublished). In: Swiss Anthropological Association (SGA) annual meeting. Basel. November 11-12, 2022.

Indra, Lara Isabelle; Lösch, Sandra (11 November 2022). The effects of vertebrate animals on exposed cadavers: Findings from an experiment (Unpublished). In: Swiss Anthropological Association (SGA) annual meeting. Basel. 11.-12. November 2022.

Cantieni, Tarcisi; da Silva-Kress, Oliver; Wolf, Ursula (2022). Detectability of low-oxygenated regions in human muscle tissue using near-infrared spectroscopy and phantom models. Biomedical optics express, 13(12), pp. 6182-6195. Optical Society of America 10.1364/BOE.473563

Şimşek, Kadir; Döring, André; Pampel, André; Möller, Harald E; Kreis, Roland (2022). Macromolecular background signal and non-Gaussian metabolite diffusion determined in human brain using ultra-high diffusion weighting. Magnetic resonance in medicine, 88(5), pp. 1962-1977. Wiley-Liss 10.1002/mrm.29367

Ruckli, Adrian Cyrill; Schmaranzer, Florian; Meier, Malin K; Lerch, Till D; Steppacher, Simon D; Tannast, Moritz; Zeng, Guodong; Burger, Jürgen; Siebenrock, Klaus A; Gerber, Nicolas; Gerber, Kate (2022). Automated quantification of cartilage quality for hip treatment decision support. International journal of computer assisted radiology and surgery, 17(11), pp. 2011-2021. Springer 10.1007/s11548-022-02714-z

Belle, Fabiën N; Sláma, Tomáš; Schindera, Christina; Diesch-Furlanetto, Tamara; Kartal-Kaess, Mutlu; Kuehni, Claudia E; Mader, Luzius (2022). Body image in adolescent survivors of childhood cancer: The role of chronic health conditions. Pediatric blood & cancer, 69(11), e29958. Wiley 10.1002/pbc.29958

Pilotto, Federica; Schmitz, Alexander; Maharjan, Niran; Diab, Rim; Odriozola, Adolfo; Tripathi, Priyanka; Yamoah, Alfred; Scheidegger, Olivier; Oestmann, Angelina; Dennys, Cassandra N; Sinha Ray, Shrestha; Rodrigo, Rochelle; Kolb, Stephen; Aronica, Eleonora; Di Santo, Stefano; Widmer, Hans Rudolf; Charlet-Berguerand, Nicolas; Selvaraj, Bhuvaneish T; Chandran, Siddharthan; Meyer, Kathrin; ... (2022). PolyGA targets the ER stress-adaptive response by impairing GRP75 function at the MAM in C9ORF72-ALS/FTD. Acta neuropathologica, 144(5), pp. 939-966. Springer-Verlag 10.1007/s00401-022-02494-5

Bührer, Elias D; Amrein, Michael A; Forster, Stefan; Isringhausen, Stephan; Schürch, Christian M; Bhate, Salil S; Brodie, Tess; Zindel, Joel; Stroka, Deborah; Al Sayed, Mohamad; Nombela-Arrieta, César; Radpour, Ramin; Riether, Carsten; Ochsenbein, Adrian F (2022). Splenic red pulp macrophages provide a niche for CML stem cells and induce therapy resistance. Leukemia, 36(11), pp. 2634-2646. Springer Nature 10.1038/s41375-022-01682-2

Reinkensmeyer, David J.; Marchal-Crespo, Laura; Dietz, Volker (eds.) (2022). Neurorehabilitation Technology. Springer 10.1007/978-3-031-08995-4

Peters, Laureen M; Howard, Judith; Leeb, Tosso; Mevissen, Meike; Graf, Rolf; Reding Graf, Theresia (2022). Identification of regenerating island-derived protein 3E in dogs. Frontiers in veterinary science, 9 Frontiers Media 10.3389/fvets.2022.1010809

Inglebert, Marine; Dettwiler, Martina; Hahn, Kerstin; Letko, Anna; Drögemüller, Cord; Doench, John; Brown, Adam; Memari, Yasin; Davies, Helen R; Degasperi, Andrea; Nik-Zainal, Serena; Rottenberg, Sven (2022). A living biobank of canine mammary tumor organoids as a comparative model for human breast cancer. Scientific Reports, 12(1), p. 18051. Nature Publishing Group 10.1038/s41598-022-21706-2

Fernandez, Javier E; Seth-Smith, Helena M B; Nordmann, Patrice; Egli, Adrian; Endimiani, Andrea; Perreten, Vincent (2022). Intra- and Interspecies Spread of a Novel Conjugative Multidrug Resistance IncC Plasmid Coharboring blaOXA-181 and armA in a Cystic Fibrosis Patient. Microbiology spectrum, 10(5), e0312122. American Society for Microbiology 10.1128/spectrum.03121-22

Kashani, Elham; Vassella, Erik (2022). Pleiotropy of PP2A Phosphatases in Cancer with a Focus on Glioblastoma IDH Wildtype. Cancers, 14(21) MDPI AG 10.3390/cancers14215227

Poel, Robert; Rüfenacht, Elias; Ermis, Ekin; Müller, Michael; Fix, Michael K; Aebersold, Daniel M; Manser, Peter; Reyes, Mauricio (2022). Impact of random outliers in auto-segmented targets on radiotherapy treatment plans for glioblastoma. Radiation oncology, 17(1), p. 170. BioMed Central 10.1186/s13014-022-02137-9

Ravichandran, Keerthiraju E; Kaduhr, Lars; Skupien-Rabian, Bozena; Shvetsova, Ekaterina; Sokołowski, Mikołaj; Krutyhołowa, Ros Cisław; Kwasna, Dominika; Brachmann, Cindy; Lin, Sean; Guzman Perez, Sebastian; Wilk, Piotr; Kösters, Manuel; Grudnik, Przemysław; Jankowska, Urszula; Leidel, Sebastian A; Schaffrath, Raffael; Glatt, Sebastian (2022). E2/E3-independent ubiquitin-like protein conjugation by Urm1 is directly coupled to cysteine persulfidation. The EMBO journal, 41(20), e111318. EMBO Press 10.15252/embj.2022111318

Dzhumashev, Dzhangar; Timpanaro, Andrea; Ali, Safa; De Micheli, Andrea J; Mamchaoui, Kamel; Cascone, Ilaria; Rössler, Jochen K; Bernasconi, Michele (2022). Quantum Dot-Based Screening Identifies F3 Peptide and Reveals Cell Surface Nucleolin as a Therapeutic Target for Rhabdomyosarcoma. Cancers, 14(20) MDPI AG 10.3390/cancers14205048

Papathanail, Ioannis; Vasiloglou, Maria F; Stathopoulou, Thomai; Ghosh, Arindam; Baumann, Manuel; Faeh, David; Mougiakakou, Stavroula (2022). A feasibility study to assess Mediterranean Diet adherence using an AI-powered system. Scientific reports, 12(1), p. 17008. Springer Nature 10.1038/s41598-022-21421-y

Karatkevich, Darya; Deng, Haibin; Gao, Yanyun; Flint, Emilio; Peng, Ren-Wang; Schmid, Ralph Alexander; Dorn, Patrick; Marti, Thomas Michael (2022). Schedule-Dependent Treatment Increases Chemotherapy Efficacy in Malignant Pleural Mesothelioma. International journal of molecular sciences, 23(19) MDPI 10.3390/ijms231911949

Barut, G Tuba; Halwe, Nico Joel; Taddeo, Adriano; Kelly, Jenna N; Schön, Jacob; Ebert, Nadine; Ulrich, Lorenz; Devisme, Christelle; Steiner, Silvio; Trüeb, Bettina Salome; Hoffmann, Bernd; Berenguer Veiga, Inês; Leborgne, Nathan Georges François; Aguiar Moreira, Etori; Breithaupt, Angele; Wylezich, Claudia; Höper, Dirk; Wernike, Kerstin; Godel, Aurélie; Thomann, Lisa; ... (2022). The spike gene is a major determinant for the SARS-CoV-2 Omicron-BA.1 phenotype. Nature Communications, 13(1), p. 5929. Springer Nature 10.1038/s41467-022-33632-y

Lee, Sohyon; Weiss, Tobias; Bühler, Marcel; Mena, Julien; Lottenbach, Zuzanna; Wegmann, Rebekka; Bihl, Michel; Augustynek, Bartlomiej; Baumann, Sven; Goetze, Sandra; van Drogen, Audrey; Vasella, Flavio; Rushing, Elisabeth J; Wollscheid, Bernd; Hediger, Matthias A; Snijder, Berend (7 October 2022). Targeting tumour-intrinsic neural vulnerabilities of glioblastoma (bioRxiv). Cold Spring Harbor Laboratory 10.1101/2022.10.07.511321

Grossenbacher, Philipp; Essers, Maria C; Moser, Joël; Singer, Simon A; Häusler, Stephanie; Stieger, Bruno; Rougier, Jean-Sébastien; Lochner, Martin (2022). Bioorthogonal site-selective conjugation of fluorescent dyes to antibodies: method and potential applications. RSC advances, 12(44), pp. 28306-28317. Royal Society of Chemistry 10.1039/d2ra05580e

Aeschlimann, Salome; Kalichava, Ana; Schimanski, Bernd; Berger, Bianca Manuela; Jetishi, Clirim; Stettler, Philip; Ochsenreiter, Torsten; Schneider, André (2022). Single p197 molecules of the mitochondrial genome segregation system of Trypanosoma brucei determine the distance between basal body and outer membrane. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 119(40), e2204294119. National Academy of Sciences NAS 10.1073/pnas.2204294119

Kelly, Jenna N; Laloli, Laura; V'kovski, Philip; Holwerda, Melle; Portmann, Jasmine; Thiel, Volker; Dijkman, Ronald (2022). Comprehensive single cell analysis of pandemic influenza A virus infection in the human airways uncovers cell-type specific host transcriptional signatures relevant for disease progression and pathogenesis. Frontiers in immunology, 13(978824), p. 978824. Frontiers Research Foundation 10.3389/fimmu.2022.978824

Abou Hamdan, Abbas; Mahler, Roman; Grossenbacher, Philipp; Biner, Olivier; Sjöstrand, Dan; Lochner, Martin; Högbom, Martin; von Ballmoos, Christoph (2022). Functional design of bacterial superoxide:quinone oxidoreductase. Biochimica et biophysica acta. Bioenergetics, 1863(7), p. 148583. Elsevier 10.1016/j.bbabio.2022.148583

Liu, Shengchen; Kohler, Andreas; Langer, Rupert; Jakob, Manuel O; Salm, Lilian; Blank, Annika; Beldi, Guido; Jakob, Stephan M (2022). Hepatic blood flow regulation but not oxygen extraction capability is impaired in prolonged experimental abdominal sepsis. American journal of physiology - gastrointestinal and liver physiology, 323(4), G348-G361. American Physiological Society 10.1152/ajpgi.00109.2022

Talon, Emile; Wimmer, Wilhelm; Hakim, Arsany; Kiefer, Claus; Pastore-Wapp, Manuela; Anschuetz, Lukas; Mantokoudis, Georgios; Caversaccio, Marco D; Wagner, Franca (2022). Influence of head orientation and implantation site of a novel transcutaneous bone conduction implant on MRI metal artifact reduction sequence. European archives of oto-rhino-laryngology, 279(10), pp. 4793-4799. Springer 10.1007/s00405-022-07272-3

Tekari, Adel; Marazza, Alessandro; Crump, Katherine; Bermudez-Lekerika, Paola; Gantenbein, Benjamin (2022). Inhibition of the extracellular signal-regulated kinase pathway reduces the inflammatory component in nucleus pulposus cells. Journal of orthopaedic research, 40(10), pp. 2362-2371. Wiley 10.1002/jor.25273

Prendin, Francesco; Cappon, Giacomo; Tripyla, Afroditi; Herzig, David; Bally, Lia; Facchinetti, Andrea (2022). Forecasting postbariatric hypoglycaemia in Roux-en-Y gastric bypass patients using model-based algorithms fed by continuous glucose monitoring data: a proof-of-concept study. Diabetes, obesity & metabolism, 24(10), pp. 2061-2065. Wiley 10.1111/dom.14783

Widmer, Sarah; Seefried, Franz R; von Rohr, Peter; Häfliger, Irene M; Spengeler, Mirjam; Drögemüller, Cord (2022). Associated regions for multiple birth in Brown Swiss and Original Braunvieh cattle on chromosomes 15 and 11. Animal genetics, 53(5), pp. 557-569. Wiley 10.1111/age.13229

Jacinto, Joana G P; Häfliger, Irene M; Caivano, Domenico; Drögemüller, Cord (2022). A germline de novo variant in NUMB associated with a double-outlet right ventricle in Chianina cattle. Animal genetics, 53(5), pp. 713-714. Wiley 10.1111/age.13236

Doorenbos, Lars; Sznitman, Raphael; Márquez-Neila, Pablo (October 2022). Data Invariants to Understand Unsupervised Out-of-Distribution Detection (In Press). In: European conference on computer vision.

Kochetkova, Tatiana; Groetsch, Alexander; Indermaur, Michael; Peruzzi, Cinzia; Remund, Stefan; Neuenschwander, Beat; Bellon, Benjamin; Michler, Johann; Zysset, Philippe; Schwiedrzik, Jakob (2022). Assessing minipig compact jawbone quality at the microscale. Journal of the mechanical behavior of biomedical materials, 134, p. 105405. Elsevier 10.1016/j.jmbbm.2022.105405

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